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3D disease modeling built around your research question

Every research question places different demands on a 3D model. The right model must capture the cell-cell and cell-matrix interactions that influence the result, while remaining reproducible and compatible with the assays your team already uses.

RASTRUM™ provides a controlled, plate-based way to build matrix-embedded 3D cell models with defined cellular context, matrix conditions, and architecture. Start with your own model concept, adapt an established workflow, or work with Inventia scientists to develop one around your study. 

Research areas for 3D disease models

What a model needs depends on the biology. Cancer and immuno-oncology studies often rely on how different cell types interact and on the matrix around them. Neural work needs connectivity you can actually measure. Fibroblast and toxicology studies ask for something else again: the right activation state, a well-designed exposure, and readouts that fit the question.

Cancer
In vitro model of the tumor-stroma interface. A co-culture of primary normal human lung fibroblasts (NHLF cells) and primary human vascular endothelial cells (HUVECs) was printed to interface with A549 lung adenocarcinoma cells, using a triple matrix model architecture. Cell nuclei (purple) were labeled with DAPI, filamentous actin (blue) with phalloidin, and the endothelial marker CD31 (gold) with a protein-specific antibody, at day 9 post-printing.

The behavior of cancer cells can change when they are cultured with fibroblasts, immune cells, endothelial cells, or under different matrix conditions. Those influences can affect growth, treatment response, migration, and invasion, and they are easy to miss in a tumor-cell monoculture.

RASTRUM enables integrated or spatially defined co-culture models in tunable matrices, so researchers can isolate the contribution of tumor, stromal, immune, and matrix components. Use these models to test whether a response persists when additional biological context is introduced. 

Toxicology

A useful toxicology model has to do more than remain viable at a single endpoint. It must support the exposure schedule, comparison set, and readouts needed to investigate a safety signal or rank compounds.

RASTRUM provides a repeatable, plate-based format for 3D toxicology studies. In established liver workflows, primary human hepatocyte models can be evaluated under acute, chronic, or repeat-dose exposure designs using viability, imaging, and molecular readouts. Similar development approaches may be applied to other toxicology questions in other cell systems using additional assays.

Neural and neurodegenerative disease research
Fluorescent maximum projections of 3D RASTRUM matrices containing mature neurons at 28 days (blue = DAPI, green = MAP2, orange = Tyrosine hydroxylase, red = FoxA2).

iPSC-derived neural models offer human cell context, but they can be difficult to produce with the consistency and throughput needed for comparative studies. The experimental challenge is to preserve multicellular interactions and structural phenotypes while keeping model generation and analysis practical.

RASTRUM has been used to generate iPSC-derived neuron-astrocyte co-cultures in 96- and 384-well formats. These models showed mature neural markers and neurite and astrocyte projections, and were compatible with cell dyes, immunostaining, and neurite outgrowth assays.

A spatially defined RASTRUM forebrain cortex model has also been used to quantify neurite extension across a hydrogel bridge. In an Alzheimer’s disease study, APP-mutant cultures showed impaired neurite and synapse formation in 3D relative to controls, a difference that was not reproduced in matched 2D cultures.

Together, these workflows demonstrate how neural and neurodegenerative disease research can move beyond cell survival to questions of morphology, connectivity, and disease-associated phenotype.

Fibroblast activation and stromal biology
A549 and NHLF printed in the Triple Matrix Model and imaged after seven days. Cells were labelled using the PhenoVue Cell Painting Kit (nuclear stain (blue), Concanavalin A - endoplasmic reticulum (green), WGA - golgi (yellow - cytoplasm) and Phalloidin - actin cytoskeleton (yellow)).

Fibroblast activation state can alter collagen production, stromal signaling, and the behavior of neighboring cells. Yet fibroblasts grown on stiff 2D plastic may become activated before the experiment begins, making it harder to separate a controlled biological stimulus from culture-induced background.

RASTRUM matrices provide a defined 3D environment for establishing a fibroblast model with maintained activation state, then introducing a modulator of fibroblast activity under controlled conditions. In Inventia’s Fibroblast Activation Validated Solution, TGF-β stimulation of normal human lung fibroblasts increased collagen I and COL1A1 expression, providing a measurable activation response.

Use this workflow as a starting point for studies of fibroblast activation, stromal biology, collagen deposition, tumor-stroma interactions, and compounds intended to modulate the activated phenotype. 

Immuno-oncology

Endpoint tumor killing is only one part of an immuno-oncology experiment. The harder question is whether immune cells can reach tumor cells, engage with them, and mount a cytotoxic response, and how the matrix or stromal context changes each step.

RASTRUM enables direct tumor-immune co-cultures and infiltration models in defined 3D matrices. Researchers can measure immune-cell infiltration and co-localization alongside tumor growth and cytotoxicity, rather than relying on a single endpoint.

In a RASTRUM model using A549 lung cancer cells, activated peripheral blood mononuclear cells inhibited tumor growth in direct co-culture. A related model demonstrated cytotoxic T lymphocyte infiltration and showed that matrix stiffness modulated T cell motility and cytotoxicity. These models can help researchers examine whether a response is determined by immune-cell access, the surrounding matrix, or tumor-immune interaction.

 

Is RASTRUM a fit for your model?

Your study may span more than one of these areas, or start with a cell system that has not yet been shown here. Share the biological question, cell source, experimental scale, and intended readout with our team. We can help determine whether RASTRUM is a practical fit and whether your best starting point is flexible in-house development, a validated workflow, or hands-on support from Discovery Services. 

FAQs
Can I use my existing cell types and culture protocols with RASTRUM?
Many existing cell systems can be evaluated for use with RASTRUM, including compatible immortalized, primary, and iPSC-derived cells. The cell type may carry over, but the culture protocol may need to be adapted for a matrix-embedded 3D format, particularly around cell density, media, matrix conditions, model architecture, culture duration, and readout. Inventia can help determine what can be retained and what requires optimization.
Can RASTRUM generate co-culture and multicellular 3D models?
Yes. RASTRUM can generate single-cell-type, co-culture, multicellular, and spatially defined 3D models using compatible cell populations. Depending on the research question, cell populations can be combined within the same matrix region or organized in adjacent matrix compartments to study direct interaction, indirect signaling, infiltration, migration, or treatment response. Model suitability depends on the cells, matrix, architecture, culture conditions, and readouts.
Which downstream assays can be used with RASTRUM 3D cell models?
Depending on the model design, RASTRUM 3D cell models can support brightfield, fluorescence, and high-content imaging; viability and cytotoxicity assays; morphology and treatment-response measurements; immunostaining; and molecular analysis. Compatible cell-recovery workflows can also enable flow cytometry, gene-expression analysis, proteomics,sequencing, or further culture. Because matrix, architecture, and plate format affect assay compatibility, the intended readout should be considered at the start of model development.
Can a RASTRUM model scale from development into screening?
Yes, when the model and assay are designed with scale in mind. RASTRUM Allegro supports compatible 96- and 384-well workflows, but moving from development into screening still requires confirmation of cell supply, matrix and architecture, culture conditions, assay performance, and consistency across plates and runs. Not every exploratory model is automatically ready for screening without further optimization.

What are the different ways to start building a model with RASTRUM?
Teams can develop and optimize their own workflow through Discovery Mode, begin with a Validated Solution when an available model matches the intended context of use, or work with Discovery Services for hands-on model development, study execution, and workflow transfer. The best path depends on how well defined the biology and readouts already are, whether a suitable starting workflow exists, and how much internal development your team wants to undertake.
What information should I provide when discussing a model with Inventia?
Useful starting information includes the biological question and success criteria; cell types, source, and approximate availability; required cell-cell and cell-matrix interactions; current culture method; treatment or exposure design; desired plate format and scale; culture duration; and intended readouts. It also helps to share what has already worked, what has not, which parts of the workflow are fixed and what your experience level of 3D culture is. You do not need a finalized protocol before starting the conversation.